Parameters

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RUB Bioinformatics Group edited this page Jan 24, 2021 · 4 revisions

Main Parameters

Epsilon:

https://github.com/RUB-Bioinf/HT-PropagatedNeuriteSkeletonization/blob/a9a3539f358640d726cb749235b5061813be5c96/src/soft/soft_2dskeletonization/main.cpp#L68

ImageJ Params:

https://github.com/RUB-Bioinf/HT-PropagatedNeuriteSkeletonization/blob/a9a3539f358640d726cb749235b5061813be5c96/src/soft/soft_2dskeletonization/main.cpp#L219

Misc

If the file name is too short:

https://github.com/RUB-Bioinf/HT-PropagatedNeuriteSkeletonization/blob/a9a3539f358640d726cb749235b5061813be5c96/src/soft/soft_2dskeletonization/main.cpp#L390

Hidden morphological structure elements & masks:

https://github.com/RUB-Bioinf/HT-PropagatedNeuriteSkeletonization/blob/a9a3539f358640d726cb749235b5061813be5c96/src/soft/soft_2dskeletonization/main.cpp#L500