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98 changes: 32 additions & 66 deletions docs/Project/DMP.md
Original file line number Diff line number Diff line change
Expand Up @@ -4,85 +4,51 @@ The **Data Management Plan (DMP)** helps you describe how your project’s data

You can access the DMP from your project's home page under the **DMP tab**.

```{tip}
Most fields here are automatically filled and extracted from the information you provided during project or dataset creation. You only need to review and add any missing details.
```

## How to complete the DMP

The DMP is divided into several section(s). Each group contains fields that either:

* **Require your input**: Information such as funding details and storage location

or

* **Auto-filled by the system**: Based on the information provided during project and dataset creation (e.g., project name, description, ID)
The DMP is divided into several section(s). Each group contains fields that **require your input**

Let's look at each group in detail:


### 1. Project Details

This section provides general information about the project:
### 1. Project Metadata

* **Project Identifier**: A unique ID for your project generated by the system
In this section you select the expected project end date. You can edit it later if needed.

* **Project Title & Description**
### 2. Funding

* **Contact Persons**: Project Creator, PI, Collaborator
Here you can enter the funding details:

* **Project creation & end date**
* **Funding Identifier** (e.g.,https://ror.org/027754r66)
* **Funder Name** (e.g., Novo Nordisk Foundation)
* **Funding Status** which can be:

* **Funding information**: Funding source and grant details
* Planned
* Applied
* Granted
* Rejected

* <span style="color:#999999">**LIMS (Benchling) project**: Indicate if there is a Benchling project to link (coming soon)</span>

### 2. Data Collection

This section covers what data you collect and how it is generated:

* **Existing Data**: State if you use pre-existing datasets

* **Dataset Identifier**: A unique ID for your dataset generated by the system

* **Dataset Title & Description**

* **Dataset Creator**

* **Dataset Created Date**

* **Access Rights**: Define who can access the dataset → *(For more details see [Note](this_is_the_reference_point).)*

* Restricted
* BRIGHT-visible
This section focuses on whether this project uses external data.

* **Dataset Type**: Specify the type of the data:
If **yes**, you can add information about each external data source by providing a **Title** and a short **Content** description.
You can add as many entries as needed.

* Raw
* Processed
* Results

* **Resource Type**: The type of experiment or analytical approach that produced the data, such as:

* DNA sequencing
* RNA sequencing
* Proteomics (DIA)

* **Instrument**: List the instrument or equipment used to generate the data such as:

* MiSeq (illumina)
* NextSeq (illumina)
* GridION (Nanopore)

### 3. Data Storage & Backup

*(All fields in this section require your input!)*

This section covers questions about how and where your data will be stored and backed up during and after the project is finished:

* **Main & Other Data storage**: Specify the main storage and any secondary location.
```{important}
All project and dataset metadata **during the project** will be stored in the BRIGHT Data Catalog and backed up daily. All raw and processed files will be stored in a cloud storage (currently a Microsoft Storage account; Region: West Europe)
```

* **Physical data location**: Indicate where physical copies (if any) are stored.
* **Additional data storage**: Select any secondary storage location from the dropdown.

* **Physical data location**: Provide details about where physical copies (if any) are stored.

* **Backup solutions**: Describe any other backup solution (e.g., *Additional backups on my personal laptop are stored on an external hard drive*).

Expand All @@ -94,34 +60,34 @@ Be aware that if you store data in **DTU M-drive** or **DTU personal OneDrive**,

### 4. Documentation

*(The field in this section require your input!)*

Provide details about project documentation:

* **Documentation**: List documentation formats

**Example**: All electronic lab notebooks (ELNs) will be stored in Benchling project folder 'Microbial_soil_community'. Whenever applicable, a README file will be created for each dataset, detailing the data collection methods, processing steps, and any relevant metadata.


### 5. Data Sharing, Access & Compliance

*(All fields in this section require your input, except for the last one!)*
This section includes a series of questions about compliance and data sharing. Most questions are answered by choosing **Yes**, **No**, **Uncertain**, or **Not applicable** (dependig on the field):

This section includes questions about compliance and data sharing:
* **Biological Material**: State whether the project uses biological material such as microorganisms or material of animal, plant, or human origin.

* **Biological Material / Hazardous Substances:**: State if your project involves these
* **Medicines, Drugs, Radioactive Isotopes**: State if any of these substances are part of the project.

* **Personal Data (GDPR)**: State if personal or sensitive data is involved
* **Toxic Substances**: Answer whether toxic chemicals or naturally produced toxins are used.

* **Access Controlled in Data Catalog**: Choose who can view your data:
* **Nanoscale Practicles**: Specify how nanoscale materials are handled.

* Restricted
* BRIGHT-visible
* **Personal Data (GDPR)**: State if any personal or sensitive data is involved in the project, such as age, DNA, RNA, biometrics, etc.

* **Sharing After Project Ends**: Specify if data will be made public after completion
* **Access Controlled Inside and Outside the Data Catalog**: Describe how access to the data is controlled both inside and outside BRIGHT Data Catalog.

* **Sharing After Project Ends**: Explain what will happen to the data once the project is complete. For example, whether it will be deposited in DTU Data, shared on GitHub, or restricted due to NDA/GDPR.


```{note}
(this_is_the_reference_point)=

→ **Restricted**: Access for all project, dataset metadata and files in Microsoft Azure Storage account is restricted to project members and collaborators.

→ **BRIGHT-visible**: READ-ONLY access for project and dataset metadata is granted to all BRIGHT employees. Access to files in Microsoft Azure Storage account remains restricted to project members and collaborators.
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