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homooligomer and different length

Status: Open.

#144 In dauparas/ProteinMPNN;

· MrGao1997 opened on Dec 22, 2025

What should "--num_examples_per_epoch" be set to?

Status: Open.

#142 In dauparas/ProteinMPNN;

· kosonocky opened on Dec 3, 2025

Best Practices for Large-Scale ProteinMPNN → FastRelax Runs: Are Per-Backbone Designs Truly Independent?

Status: Open.

#141 In dauparas/ProteinMPNN;

· kimlab-cnu opened on Nov 29, 2025

Output interpretation

Status: Open.

#139 In dauparas/ProteinMPNN;

· Mossy-Frog opened on Nov 7, 2025

Security audit results

Status: Open.

#138 In dauparas/ProteinMPNN;

· TimCraigCGPS opened on Oct 20, 2025

Possible bug in model initialization (<code>num_decoder_layers</code>)

Status: Open.

#136 In dauparas/ProteinMPNN;

· Snail-TI opened on Aug 26, 2025

Do amino acid types specified in the input backbone PDB file affect the designed result?

Status: Open.

#135 In dauparas/ProteinMPNN;

· daniel-dpq opened on Aug 18, 2025

Fixed positions JSONL only loads last entry

Status: Open.

#133 In dauparas/ProteinMPNN;

· ssiddhantsharma opened on Aug 2, 2025

How does ProteinMPNN select the sampled sequences to report in the output file?

Status: Open.

#131 In dauparas/ProteinMPNN;

· Sohini-git opened on Jun 30, 2025

How process a batch data?

Status: Open.

#130 In dauparas/ProteinMPNN;

· code4luck opened on Jun 21, 2025

Question about list.csv HASH (mentioned in training/README.md)

Status: Open.

#129 In dauparas/ProteinMPNN;

· CyvenH opened on May 29, 2025

temperature

Status: Open.

#128 In dauparas/ProteinMPNN;

· 1a2bfdasfdsg opened on Apr 30, 2025