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Update stable to v1.0.4#33

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kelwyres merged 10 commits intostablefrom
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Apr 29, 2025
Merged

Update stable to v1.0.4#33
kelwyres merged 10 commits intostablefrom
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@kelwyres
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kelwyres and others added 10 commits July 19, 2024 14:51
comment out docker build
update to Kelly github repo
Fixed error regarding unhashable SeqFeatures.

Error was as follows:

```bash
 warnings.warn(
Traceback (most recent call last):
  File "/projects/kr58/software/conda_envs/bactabolize_v1.0.1/bin/bactabolize", line 10, in <module>
    sys.exit(entry())
  File "/projects/kr58/software/conda_envs/bactabolize_v1.0.1/lib/python3.9/site-packages/bactabolize/main.py", line 23, in entry
    run_draft_model(config)
  File "/projects/kr58/software/conda_envs/bactabolize_v1.0.1/lib/python3.9/site-packages/bactabolize/main.py", line 49, in run_draft_model
    annotate.run(config.assembly_fp, config.assembly_genbank_fp)
  File "/projects/kr58/software/conda_envs/bactabolize_v1.0.1/lib/python3.9/site-packages/bactabolize/annotate.py", line 50, in run
    match_existing_orfs_updated_annotations(output_fp, assembly_genbank_fp)
  File "/projects/kr58/software/conda_envs/bactabolize_v1.0.1/lib/python3.9/site-packages/bactabolize/annotate.py", line 128, in match_existing_orfs_updated_annotations
    features_matched = discover_overlaps(positions, overlap_min)
  File "/projects/kr58/software/conda_envs/bactabolize_v1.0.1/lib/python3.9/site-packages/bactabolize/annotate.py", line 202, in discover_overlaps
    if (feature_new, feature_existing) in features_matched:
TypeError: unhashable type: 'SeqFeature'
```
Added specific versions for dependancies
specific version requirements for install
Update annotate.py to fix a TypeError with annotations.py
@kelwyres kelwyres merged commit 1ae523d into stable Apr 29, 2025
1 of 6 checks passed
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2 participants