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dmr pair can reorder contigs and split segments at internal batch boundaries

Status: Open.

#695 In nanoporetech/modkit;

· SuhasSrinivasan opened on Aug 6, 2026

dmr pair loses sample identity in matched replicate statistics

Status: Open.

#694 In nanoporetech/modkit;

· SuhasSrinivasan opened on Aug 6, 2026

dmr pair imputes zero-coverage replicates as canonical in balanced statistics

Status: Open.

#693 In nanoporetech/modkit;

· SuhasSrinivasan opened on Aug 6, 2026

extract rejects indexed all-unmapped inputs with no reference targets

Status: Open.

#692 In nanoporetech/modkit;

· SuhasSrinivasan opened on Aug 6, 2026

Automatic thresholding can silently accept samples with no probability observations

Status: Open.

#691 In nanoporetech/modkit;

· SuhasSrinivasan opened on Aug 6, 2026

CRAM references are not propagated to all threshold and extract readers

Status: Open.

#690 In nanoporetech/modkit;

· SuhasSrinivasan opened on Aug 6, 2026

Automatic thresholds can use an arbitrary explicit-canonical probability cap

Status: Open.

#689 In nanoporetech/modkit;

· SuhasSrinivasan opened on Aug 6, 2026

Seeded indexed fractional sampling changes with worker and interval settings

Status: Open.

#688 In nanoporetech/modkit;

· SuhasSrinivasan opened on Aug 6, 2026

dmr pair emits NaN results or aborts when input or coverage capping creates a zero DMR denominator

Status: Open.

#687 In nanoporetech/modkit;

· SuhasSrinivasan opened on Aug 6, 2026

dmr pair --segment omits the final successfully scored site from each HMM chunk

Status: Open.

#686 In nanoporetech/modkit;

· SuhasSrinivasan opened on Aug 6, 2026

stats and localize can succeed with incomplete results after regional query errors

Status: Open.

#685 In nanoporetech/modkit;

· SuhasSrinivasan opened on Aug 6, 2026

localize can shift feature-centered coordinates and silently ignore invalid BED rows

Status: Open.

#684 In nanoporetech/modkit;

· SuhasSrinivasan opened on Aug 6, 2026