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Pull requests: nanoporetech/modkit

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Pull requests list

Make indexed sampling and threshold caps deterministic
#705 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
7 tasks done
2
Correct coverage and replicate handling in single-site DMR
#704 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
7 tasks done
3
Preserve complete and ordered DMR segmentation
#703 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
7 tasks done
2
Preserve pileup motif ownership across chunks
#702 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
7 tasks done
1
Propagate probability sampling failures
#701 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
7 tasks done
1
Correct localize coordinates, validation, charts, and regional errors
#700 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
7 tasks done
3
Reconcile and stabilize summary output
#699 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
7 tasks done
1
Correct extract motif metadata and output accounting
#698 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
7 tasks done
1
Propagate text and DMR output failures
#697 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
7 tasks done
1
Apply edge filters consistently during probability sampling
#696 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
7 tasks done
1
Pin hts-sys to bindings compatible with rust-htslib 0.46
#666 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
8 tasks done
1
Validate bedMethyl merge inputs and preserve row identities
#664 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
8 tasks done
1
Map bedMethyl intervals and strands into genomic space
#662 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
8 tasks done
1
Reject invalid and conflicting validate truth rows
#660 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
8 tasks done
1
Correct validate observation accounting across truth sets
#659 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
8 tasks done
1
Correct combined and dynamic pileup count slots
#656 opened Aug 6, 2026 by SuhasSrinivasan Contributor Loading…
8 tasks done
1
Apply localize minimum coverage before aggregation
#652 opened Aug 5, 2026 by SuhasSrinivasan Contributor Loading…
7 tasks done
1
Exclude unmapped calls from CpG summaries
#650 opened Aug 5, 2026 by SuhasSrinivasan Contributor Loading…
7 tasks done
1
Clear generic pileup state between records
#648 opened Aug 5, 2026 by SuhasSrinivasan Contributor Loading…
7 tasks done
1
Allow N
#597 opened Mar 19, 2026 by killercup Contributor Loading…
3
Reservoir sampling for high-depth pileup
#588 opened Feb 28, 2026 by stein-andrew Loading…
1
ProTip! Exclude everything labeled bug with -label:bug.