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Merged
ivan-aksamentov merged 4 commits into from
Mar 5, 2026
+589 −3
Merged

feat: add dataset metadata fields and improve community filtering #1754

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eaeae1b
feat(schemas): add dataset metadata fields to VirusProperties and Dat…
ivan-aksamentov Mar 3, 2026
7587197
chore(schemas): regenerate JSON schema files
ivan-aksamentov Mar 3, 2026
43b3b32
refactor(dataset): replace official field with path-based community d…
ivan-aksamentov Mar 4, 2026
2a538b5
refactor(dataset): remove unused enabled field
ivan-aksamentov Mar 5, 2026
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2 changes: 1 addition & 1 deletion packages/nextclade-cli/src/cli/nextclade_dataset_list.rs
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Original file line number Diff line number Diff line change
Expand Up @@ -55,7 +55,7 @@ pub fn nextclade_dataset_list(
} else {
let is_not_deprecated = include_deprecated || !dataset.deprecated();
let is_not_experimental = !no_experimental || !dataset.experimental();
let is_not_community = !no_community || dataset.official();
let is_not_community = !no_community || !dataset.is_community();
is_not_deprecated && is_not_experimental && is_not_community
}
})
Expand Down
64 changes: 64 additions & 0 deletions packages/nextclade-schemas/input-pathogen-json.schema.json
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Expand Up @@ -279,6 +279,28 @@
"type": "null"
}
]
},
"deprecated": {
"type": [
"boolean",
"null"
]
},
"experimental": {
"type": [
"boolean",
"null"
]
},
"maintenance": {
"anyOf": [
{
"$ref": "#/definitions/DatasetMaintenance"
},
{
"type": "null"
}
]
}
},
"definitions": {
Expand Down Expand Up @@ -1385,6 +1407,48 @@
"type": "string"
}
}
},
"DatasetMaintenance": {
"description": "Contact and documentation URLs for dataset maintenance",
"type": "object",
"properties": {
"website": {
"type": "array",
"items": {
"type": "string"
}
},
"documentation": {
"type": "array",
"items": {
"type": "string"
}
},
"source code": {
"type": "array",
"items": {
"type": "string"
}
},
"issues": {
"type": "array",
"items": {
"type": "string"
}
},
"organizations": {
"type": "array",
"items": {
"type": "string"
}
},
"authors": {
"type": "array",
"items": {
"type": "string"
}
}
}
}
}
}
40 changes: 40 additions & 0 deletions packages/nextclade-schemas/input-pathogen-json.schema.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -166,6 +166,18 @@ properties:
anyOf:
- $ref: '#/definitions/DatasetCompatibility'
- type: 'null'
deprecated:
type:
- boolean
- 'null'
experimental:
type:
- boolean
- 'null'
maintenance:
anyOf:
- $ref: '#/definitions/DatasetMaintenance'
- type: 'null'
definitions:
DatasetMeta:
type: object
Expand Down Expand Up @@ -928,3 +940,31 @@ definitions:
type: string
web:
type: string
DatasetMaintenance:
description: Contact and documentation URLs for dataset maintenance
type: object
properties:
website:
type: array
items:
type: string
documentation:
type: array
items:
type: string
source code:
type: array
items:
type: string
issues:
type: array
items:
type: string
organizations:
type: array
items:
type: string
authors:
type: array
items:
type: string
52 changes: 52 additions & 0 deletions packages/nextclade-schemas/internal-dataset-collection-json.schema.json
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Original file line number Diff line number Diff line change
Expand Up @@ -126,6 +126,16 @@
"type": "null"
}
]
},
"maintenance": {
"anyOf": [
{
"$ref": "#/definitions/DatasetMaintenance"
},
{
"type": "null"
}
]
}
}
},
Expand Down Expand Up @@ -283,6 +293,48 @@
"auspiceJson",
"other"
]
},
"DatasetMaintenance": {
"description": "Contact and documentation URLs for dataset maintenance",
"type": "object",
"properties": {
"website": {
"type": "array",
"items": {
"type": "string"
}
},
"documentation": {
"type": "array",
"items": {
"type": "string"
}
},
"source code": {
"type": "array",
"items": {
"type": "string"
}
},
"issues": {
"type": "array",
"items": {
"type": "string"
}
},
"organizations": {
"type": "array",
"items": {
"type": "string"
}
},
"authors": {
"type": "array",
"items": {
"type": "string"
}
}
}
}
}
}
32 changes: 32 additions & 0 deletions packages/nextclade-schemas/internal-dataset-collection-json.schema.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -83,6 +83,10 @@ definitions:
anyOf:
- $ref: '#/definitions/DatasetType'
- type: 'null'
maintenance:
anyOf:
- $ref: '#/definitions/DatasetMaintenance'
- type: 'null'
DatasetMeta:
type: object
properties:
Expand Down Expand Up @@ -184,3 +188,31 @@ definitions:
- directory
- auspiceJson
- other
DatasetMaintenance:
description: Contact and documentation URLs for dataset maintenance
type: object
properties:
website:
type: array
items:
type: string
documentation:
type: array
items:
type: string
source code:
type: array
items:
type: string
issues:
type: array
items:
type: string
organizations:
type: array
items:
type: string
authors:
type: array
items:
type: string
52 changes: 52 additions & 0 deletions packages/nextclade-schemas/internal-dataset-json.schema.json
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Original file line number Diff line number Diff line change
Expand Up @@ -46,6 +46,16 @@
"type": "null"
}
]
},
"maintenance": {
"anyOf": [
{
"$ref": "#/definitions/DatasetMaintenance"
},
{
"type": "null"
}
]
}
},
"definitions": {
Expand Down Expand Up @@ -203,6 +213,48 @@
"auspiceJson",
"other"
]
},
"DatasetMaintenance": {
"description": "Contact and documentation URLs for dataset maintenance",
"type": "object",
"properties": {
"website": {
"type": "array",
"items": {
"type": "string"
}
},
"documentation": {
"type": "array",
"items": {
"type": "string"
}
},
"source code": {
"type": "array",
"items": {
"type": "string"
}
},
"issues": {
"type": "array",
"items": {
"type": "string"
}
},
"organizations": {
"type": "array",
"items": {
"type": "string"
}
},
"authors": {
"type": "array",
"items": {
"type": "string"
}
}
}
}
}
}
32 changes: 32 additions & 0 deletions packages/nextclade-schemas/internal-dataset-json.schema.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -29,6 +29,10 @@ properties:
anyOf:
- $ref: '#/definitions/DatasetType'
- type: 'null'
maintenance:
anyOf:
- $ref: '#/definitions/DatasetMaintenance'
- type: 'null'
definitions:
DatasetMeta:
type: object
Expand Down Expand Up @@ -131,3 +135,31 @@ definitions:
- directory
- auspiceJson
- other
DatasetMaintenance:
description: Contact and documentation URLs for dataset maintenance
type: object
properties:
website:
type: array
items:
type: string
documentation:
type: array
items:
type: string
source code:
type: array
items:
type: string
issues:
type: array
items:
type: string
organizations:
type: array
items:
type: string
authors:
type: array
items:
type: string
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