Repositories list

• EuroNMDToCARESM

  Public
  Converting EuroMD data to the CARE-SM semantic model

  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 28, 2025Nov 28, 2025

• AutoQ-RWD

  Public
  Automated data Quality Metrics Assesment (AutoQ) in Real World Data (RWD) for Common Data Elements (CDE)

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 28, 2025Nov 28, 2025

• DM1_ReCognitION_Proteomics

  Public
  R

  •0•0•0•0•Updated Nov 20, 2025Nov 20, 2025

• mrs

  Public
  Maarten's Retrieval Service

  C

  •

  Boost Software License 1.0

  •4•0•40•2•Updated Oct 23, 2025Oct 23, 2025

• Benchmark_GNN_OpenTargets

  Public
  Python

  •

  MIT License

  •3•0•0•0•Updated Sep 28, 2025Sep 28, 2025

• xssp-api

  Public
  xssp-rest is a REST wrapper around the mkhssp and mkdssp applications.

  Python

  •4•0•12•4•Updated Aug 27, 2025Aug 27, 2025

• reprof-api

  Public
  RESTful service for running reprof

  Python

  •1•0•6•1•Updated Jul 8, 2025Jul 8, 2025

• seqwise-prediction

  Public
  a deep learning tool for sequence wise prediction of protein classes

  Python

  •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

• Retina-SpliceAI

  Public
  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Oct 10, 2024Oct 10, 2024

• alphafold_finetune

  Public
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions

  Python

  •

  Apache License 2.0

  •25•0•0•0•Updated Oct 7, 2024Oct 7, 2024

• gdomain

  Public
  gdomain tool

  Python

  •0•0•0•0•Updated Sep 27, 2024Sep 27, 2024

• Neural-Retina-Atlas

  Public
  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

• hssp

  Public
  Create DSSP and HSSP files

  C++

  •

  GNU General Public License v3.0

  •19•94•29•0•Updated Jul 18, 2024Jul 18, 2024

• FAIRDataPoint

  Public
  for search extension

  Java

  •

  MIT License

  •37•0•0•0•Updated Feb 16, 2024Feb 16, 2024

• FAIRDataPoint-client

  Public
  FAIR Data Point Client application for browsing the metadata and administration.

  Vue

  •

  MIT License

  •11•0•0•0•Updated Dec 15, 2023Dec 15, 2023

• compact-bio

  Public
  comparative clustering tool

  Python

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Nov 14, 2023Nov 14, 2023

• hpi_isoseq_paper

  Public
  Analysis scripts to accompany the manuscript titled "Multi-omic profiling of pathogen-stimulated primary immune cells"

  Python

  •

  MIT License

  •0•0•0•0•Updated Oct 13, 2023Oct 13, 2023

• NA12878-saav-detection

  Public
  Salz et al (2021). The personalized proteome: a critical examination of bias in protein variant detection methods. Journal of Proteome Research

  Jupyter Notebook

  •0•0•0•0•Updated Oct 10, 2023Oct 10, 2023

• hommod

  Public
  Homology Modeling Service

  Python

  •3•1•7•3•Updated Sep 12, 2023Sep 12, 2023

• dssp

  Public
  The DSSP building software

  C++

  •

  GNU General Public License v3.0

  •20•48•1•0•Updated Aug 7, 2023Aug 7, 2023

• wsv_rest

  Public
  A restful service, used as wrapper around whatif wsv commands

  Python

  •0•0•0•0•Updated Jul 11, 2023Jul 11, 2023

• SUsPECT

  Public
  Variant effect prediction based on custom long-read transcriptomes

  Nextflow

  •

  Apache License 2.0

  •1•7•1•0•Updated Jun 15, 2023Jun 15, 2023

• whynot2

  Public
  Python

  •2•0•14•3•Updated May 1, 2023May 1, 2023

• bdb-web

  Public
  BDB-web

  Python

  •2•0•3•1•Updated May 1, 2023May 1, 2023

• serendip_api

  Public
  restful service that runs serendip for you

  Python

  •1•0•0•3•Updated May 1, 2023May 1, 2023

• kmad-web

  Public
  HTML

  •1•1•7•5•Updated Apr 18, 2023Apr 18, 2023

• kmad

  Public
  Knowledge based multiple sequence alignment for intrinsically disordered proteins

  C++

  •

  GNU General Public License v3.0

  •4•8•7•0•Updated Apr 17, 2023Apr 17, 2023

• BrainDM1

  Public
  Scripts and files to reproduce the analysis of "A comprehensive atlas of fetal splicing patterns in the brain of adult myotonic dystrophy type 1 patients".

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 17, 2023Apr 17, 2023

• databanks

  Public
  Perl

  •0•0•9•1•Updated Feb 9, 2023Feb 9, 2023

• galiphy

  Public
  ranking of genes using human phenotypes

  HTML

  •1•2•1•2•Updated Feb 2, 2023Feb 2, 2023