feat: Add configurable protocol support to ensembl reference download - #2649

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pettyalex wants to merge 5 commits into

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belowlab:add_http_protocol_support_vep_ensembl

Commits on Feb 15, 2024

Add the support for configurable protocol, ftp, http, or https to ensembl reference data download and vep cache download.
pettyalex
committed
16e9da4

Commits on Feb 19, 2024

Add tests for getting reference data over http
pettyalex
committed
d82fa78
Run snakefmt over reference download tools.
pettyalex
committed
94cdbfd

Commits on Feb 22, 2024

Split off https into different snakemake files to avoid name collision. Add each new test case to test.py.
pettyalex
committed
17d4d28

Commits on Feb 23, 2024

Fix tests for annotation and make https protocol output gzipped.
pettyalex
committed
1a84082