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Pull requests: nf-core/modules

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Pull requests list

Now using multiMap and regexp for post-fix removal
#9287 opened Oct 28, 2025 by GallVp Loading…
1 of 17 tasks
1
Updated falint to 1.2.0
#9286 opened Oct 28, 2025 by GallVp Loading…
1 of 17 tasks
feat: addition of vembrane table module
#9285 opened Oct 28, 2025 by mkatsanto Loading…
11 of 14 tasks
2
Add new module: seqfu/check
#9283 opened Oct 28, 2025 by kornkv Loading…
14 tasks done
8
9244 new subworkflow fastq preprocess
#9281 opened Oct 28, 2025 by maia-munteanu Loading…
13 of 18 tasks
1
Implement short read QC subworkflow
#9279 opened Oct 28, 2025 by pablo-scd Loading…
8 of 17 tasks
1
@vagkaratzas
10
trim_galore version
#9276 opened Oct 28, 2025 by yadavbha Loading…
17 tasks
2
feat: update samtools sort module with version topic support
#9275 opened Oct 28, 2025 by wangdepin Loading…
2 of 17 tasks
1
Add Autocycler subtool modules (subsample, compress, cluster, trim, resolve, combine)
#9274 opened Oct 28, 2025 by dwells-eit Loading…
11 of 13 tasks
1
8
Add Topic-based tool version capture to Trinity Module
#9273 opened Oct 28, 2025 by eit-maxlcummins Loading…
2 of 17 tasks
2
topics bismark/align
#9272 opened Oct 28, 2025 by nvnieuwk Loading…
17 tasks
2
Multiqc2topics
#9271 opened Oct 28, 2025 by kobelavaerts Loading…
3 of 17 tasks
1
8
update module: vcf2zarr/convert
#9270 opened Oct 28, 2025 by camlloyd Loading…
2 of 17 tasks
1
1
adding topics channel to tabix_tabix
#9267 opened Oct 28, 2025 by mapo9 Loading…
17 tasks
1
1
Converts FASTQ to use topics for version
#9266 opened Oct 28, 2025 by mribeirodantas Loading…
3 of 17 tasks
1
@mribeirodantas
4
update module: bioformats2raw
#9256 opened Oct 27, 2025 by camlloyd Loading…
1 of 17 tasks
1
Allow non-count data in DREAM
#9254 opened Oct 27, 2025 by delfiterradas • Draft
17 tasks
1
@delfiterradas
Add picrust2/pipeline module Ready for Review
#9218 opened Oct 21, 2025 by dialvarezs Loading…
11 of 17 tasks
11
New module: Ribodetector new module Adding a new module Ready for Review
#9209 opened Oct 17, 2025 by maxibor Loading…
10 tasks done
15
🔧 update image and bioconda container for VueGen to latest version
#9201 opened Oct 16, 2025 by enryH Loading…
18
New align dedup bwamem
#9197 opened Oct 15, 2025 by eduard-watchmaker Loading…
17 tasks
54
EBI MGnify - ENA Genome uploader
#9177 opened Oct 8, 2025 by mberacochea • Draft
17 tasks
15
adding homer merge peaks, and a peakcalling workflow
#9172 opened Oct 5, 2025 by cmatKhan Loading…
4
Hificnv—copy-number variant caller for PacBio HiFi long-read data new module Adding a new module Ready for Review
#9165 opened Oct 2, 2025 by chaochaowong Loading…
14 tasks done
@chaochaowong
4
POC: topics
#9159 opened Sep 30, 2025 by nvnieuwk • Draft
6
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